Bibliography

Ellegren, H., & Galtier, N. (2016). Determinants of genetic diversity. Nature Reviews Genetics, 17(7), 422-433.

Rowe, G., Sweet, M., & Beebee, T. J. C. (2017). An introduction to molecular ecology. Oxford University Press.

Hadrys, H., Balick, M., & Schierwater, B. (1992). Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Molecular ecology, 1(1), 55-63.

Vieira, M. L. C., Santini, L., Diniz, A. L., & Munhoz, C. D. F. (2016). Microsatellite markers: what they mean and why they are so useful. Genetics and molecular biology, 39, 312-328.

Karl, S. A., Toonen, R. J., Grant, W. S., & Bowen, B. W. (2012). Common misconceptions in molecular ecology: echoes of the modern synthesis. Molecular Ecology, 21(17), 4171-4189.

Ekblom, R., & Galindo, J. (2011). Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107(1), 1-15.

Ross, K. G. (2001). Molecular ecology of social behaviour: analyses of breeding systems and genetic structure. Molecular ecology, 10(2), 265-284.

Kirk, H., & Freeland, J. R. (2011). Applications and implications of neutral versus non-neutral markers in molecular ecology. International journal of molecular sciences, 12(6), 3966-3988.

McKinney, G. J., Larson, W. A., Seeb, L. W., & Seeb, J. E. (2017). RAD seq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al.(2016). Molecular ecology resources, 17(3), 356-361.

Andrew, R. L., Bernatchez, L., Bonin, A., Buerkle, C. A., Carstens, B. C., Emerson, B. C., … & Rieseberg, L. H. (2013). A road map for molecular ecology. Molecular ecology, 22(10), 2605-2626.

Ford, M. J. (2002). Applications of selective neutrality tests to molecular ecology. Molecular Ecology, 11(8), 1245-1262.

Bensch, S., & Åkesson, M. (2005). Ten years of AFLP in ecology and evolution: why so few animals?. Molecular ecology, 14(10), 2899-2914.

Johnson, J. B., Peat, S. M., & Adams, B. J. (2009). Where’s the ecology in molecular ecology?. Oikos, 118(11), 1601-1609.

Moritz, C. (1994). Applications of mitochondrial DNA analysis in conservation: a critical review. Molecular ecology, 3(4), 401-411.

DeSalle, R., & Goldstein, P. (2019). Review and interpretation of trends in DNA barcoding. Frontiers in Ecology and Evolution, 7, 302.

Valentini, A., Pompanon, F., & Taberlet, P. (2009). DNA barcoding for ecologists. Trends in ecology & evolution, 24(2), 110-117.

Hebert, P. D., & Gregory, T. R. (2005). The promise of DNA barcoding for taxonomy. Systematic biology, 54(5), 852-859.

Pires, A. C., & Marinoni, L. (2010). DNA barcoding and traditional taxonomy unified through Integrative Taxonomy: a view that challenges the debate questioning both methodologies. Biota Neotropica, 10, 339-346.

Hey, J. (2006). On the failure of modern species concepts. Trends in ecology & evolution, 21(8), 447-450.

De Queiroz, K. (2007). Species concepts and species delimitation. Systematic biology, 56(6), 879-886.

Mayr, E. (2000). The biological species concept. Species concepts and phylogenetic theory: a debate. Columbia University Press, New York, 17-29.

Moritz, C. (1994). Defining ‘evolutionarily significant units’ for conservation. Trends in ecology & evolution, 9(10), 373-375.

Casacci, L. P., Barbero, F., & Balletto, E. (2014). The “Evolutionarily Significant Unit” concept and its applicability in biological conservation. Italian Journal of Zoology, 81(2), 182-193.

Barton, N. H. (2001). The role of hybridization in evolution. Molecular ecology, 10(3), 551-568.

Abbott, R., Albach, D., Ansell, S., Arntzen, J. W., Baird, S. J., Bierne, N., et al.  (2013). Hybridization and speciation. Journal of evolutionary biology, 26(2), 229-246.

Chan, W. Y., Hoffmann, A. A., & van Oppen, M. J. (2019). Hybridization as a conservation management tool. Conservation Letters, 12(5), e12652.

Allendorf, F. W., Leary, R. F., Spruell, P., & Wenburg, J. K. (2001). The problems with hybrids: setting conservation guidelines. Trends in ecology & evolution, 16(11), 613-622

Bohling, J. H. (2016). Strategies to address the conservation threats posed by hybridization and genetic introgression. Biological Conservation, 203, 321-327

Buggs, R. J. A. (2007). Empirical study of hybrid zone movement. Heredity, 99(3), 301-312.

Bock, D. G., Caseys, C., Cousens, R. D., Hahn, M. A., Heredia, S. M., Hübner, S., et al. (2016). What we still don’t know about invasion genetics. Invasion genetics: The baker and stebbins legacy, 346-370

Ficetola, G. F., Bonin, A., & Miaud, C. (2008). Population genetics reveals origin and number of founders in a biological invasion. Molecular Ecology, 17(3), 773-782

Lynch, M., Ackerman, M. S., Gout, J. F., Long, H., Sung, W., Thomas, W. K., & Foster, P. L. (2016). Genetic drift, selection and the evolution of the mutation rate. Nature Reviews Genetics, 17(11), 704-714.

Petrie, M., Doums, C., & Møller, A. P. (1998). The degree of extra-pair paternity increases with genetic variability. Proceedings of the National Academy of Sciences, 95(16), 9390-9395

Brouwer, L., & Griffith, S. C. (2019). Extra‐pair paternity in birds. Molecular ecology, 28(22), 4864-4882.

Heckel, G., & Von Helversen, O. (2003). Genetic mating system and the significance of harem associations in the bat Saccopteryx bilineata. Molecular Ecology, 12(1), 219-227.

Nunney, L. (1993). The influence of mating system and overlapping generations on effective population size. Evolution, 47(5), 1329-1341.

Charpentier, M., Hossaert-McKey, M., Wickings, E. J., & Peignot, P. (2005). Consequences of a one-male harem reproductive system and inbreeding in a captive group of Cercopithecus solatus. International Journal of Primatology, 26, 697-710.

Avise, J. C. (2009). Phylogeography: retrospect and prospect. Journal of biogeography, 36(1), 3-15.

Knowles, L. L. (2009). Statistical phylogeography. Annual Review of Ecology, Evolution, and Systematics, 40, 593-612.

Beheregaray, L. B. (2008). Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere. Molecular ecology, 17(17), 3754-3774

Arbogast, B. S., & Kenagy, G. J. (2001). Comparative phylogeography as an integrative approach to historical biogeography. Journal of Biogeography, 28(7), 819-825

DeSalle, R., & Amato, G. (2009). The expansion of conservation genetics. Conservation genetics in the age of genomics, 1-24

Frankham, R., Briscoe, D. A., & Ballou, J. D. (2002). Introduction to conservation genetics. Cambridge university press.

Ouborg, N. J., Pertoldi, C., Loeschcke, V., Bijlsma, R. K., & Hedrick, P. W. (2010). Conservation genetics in transition to conservation genomics. Trends in genetics, 26(4), 177-187.

Hohenlohe, P. A., Funk, W. C., & Rajora, O. P. (2021). Population genomics for wildlife conservation and management. Molecular Ecology, 30(1), 62-82.

Andrews, K. R., Good, J. M., Miller, M. R., Luikart, G., & Hohenlohe, P. A. (2016). Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews Genetics, 17(2), 81-92.

Shapiro, B. (2017). Pathways to de‐extinction: how close can we get to resurrection of an extinct species?. Functional Ecology, 31(5), 996-1002.

Beaumont, M. A. (2005). Adaptation and speciation: what can Fst tell us?. Trends in ecology & evolution, 20(8), 435-440

Williams, S. E., & Hoffman, E. A. (2009). Minimizing genetic adaptation in captive breeding programs: a review. Biological conservation, 142(11), 2388-2400.

Attard, C. R. M., Möller, L. M., Sasaki, M., Hammer, M. P., Bice, C. M., Brauer, C. J., … & Beheregaray, L. B. (2016). A novel holistic framework for genetic‐based captive‐breeding and reintroduction programs. Conservation Biology, 30(5), 1060-1069.

Bowen, B. W., Gaither, M. R., DiBattista, J. D., Iacchei, M., Andrews, K. R., Grant, W. S., et al.  (2016). Comparative phylogeography of the ocean planet. Proceedings of the National Academy of Sciences, 113(29), 7962-7969.

Blomqvist, D., Pauliny, A., Larsson, M., & Flodin, L. Å. (2010). Trapped in the extinction vortex? Strong genetic effects in a declining vertebrate population. BMC Evolutionary Biology, 10, 1-9.